Really nice work Ujjwal!
Just check the Apothesis name.
In pages 4-5 it appears as Apotheosis.
Best regards,
Nikos
Στις 28/3/2023 6:50 μ.μ., ο/η Ujjwal Shekhar έγραψε:
Greetings,
Thank you for taking the time to review my proposal and providing me
with feedback. I appreciate you pointing out the repeated phrase, I
have made the necessary changes to the document.
I have also included some additional sections that were not explicitly
mentioned, but please let me know if you think they should be removed.
Additionally, I have created a Gantt Chart to better visualize the
timeline of the project, and I would appreciate any suggestions you
might have for improving it. I have attached the finished draft of my
proposal, and I'm looking forward to hearing your thoughts on my proposal.
Thanking you again for your continued support.
Best Regards,
Ujjwal Shekhar
------------------------------------------------------------------------
*From:* Nikolaos (Nikos) Cheimarios <nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
*Sent:* Tuesday, March 28, 2023 10:43 AM
*To:* Ujjwal Shekhar <ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>;
gsoc-developers [ at ] ellak [ dot ] gr <gsoc-developers [ at ] ellak [ dot ] gr>
*Subject:* Re: GSoC Project - Interest in "Creating new lattices for
Apothesis" idea
Thank you Ujjiwal. Your proposal looks strong.
Besides some parts that you repeat (in example the phrase: "In
aerospace HPC materials ..." in pages 4 and 5) it is well structured.
No. Of course the project has not been taken by someone else. Google
will decide that.
A candidate have submit that but I can not check it in this stage.
Do not forget that gsoc is for you to learn about open source not just
working on a software per se.
Best regards,
Nikos
Στις 27/3/2023 9:46 μ.μ., ο/η Ujjwal Shekhar έγραψε:
Greetings,
I hope this email finds you well. I am writing to submit the second
draft of my proposal, which now includes the Milestones and Timelines
section. The only remaining section is the Previous Work section,
which I will add in the next draft. I expect to complete it within an
hour.
During my review of the Apothesis repository, I noticed a recently
submitted PR that implements a template for the HCP lattice. I wanted
to confirm if the project is still available or has been taken by
someone else. If it is no longer available, I am still highly
interested in contributing to a different problem statement on this
repository. Please let me know if I should continue drafting a proposal.
Thank you for your time and continued support. I'm looking forward to
hearing your thoughts on my proposal.
Best regards,
Ujjwal Shekhar
------------------------------------------------------------------------
*From:* Nikolaos (Nikos) Cheimarios <nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
<mailto:nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
*Sent:* Monday, March 27, 2023 3:16 PM
*To:* Ujjwal Shekhar <ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>
<mailto:ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>; gsoc-developers [ at ] ellak [ dot ] gr
<mailto:gsoc-developers [ at ] ellak [ dot ] gr> <gsoc-developers [ at ] ellak [ dot ] gr>
<mailto:gsoc-developers [ at ] ellak [ dot ] gr>
*Subject:* Re: GSoC Project - Interest in "Creating new lattices for
Apothesis" idea
Hi Ujjwal],
please see my comments within your e-mail.
Best regards,
Nikos
Στις 27/3/2023 12:37 μ.μ., ο/η Ujjwal Shekhar έγραψε:
Greetings,
I hope you are doing well. Thank you for taking the time to review
my work and providing feedback. I have created a Pull Request
<https://github.com/nixeimar/Apothesis/pull/23> on GitHub to add the
parametric study's Python scripts. The commit message outlines my
plan for cleaning the codebase and improving the usability of the
added feature and details the changes I have made so far and the
TO-DOs for further improvement. Should I create a different folder,
titled "examples", and add a "parametric study" folder inside it
with a README.md detailing how to use it?
*_Commit message_*
Added Python scripts to do a parametric study test
TODOS:
- Arrange in a separate folder.
- Refactor into a single script.
- Add README for parametric_study
*Yes please do do. **
*
I have started working on the proposal. I am currently following the
Proposal Template
<https://ellak.gr/wiki/index.php?title=Proposal_Template> provided
by GFOSS. However, the website has some outdated information, so I
listed a few doubts I had:
* In the *Basic Details *section, it asks for my "_IRC nickname on
#sugar"._ Does GFOSS have an IRC channel that I can join?
* In the *Your Motivation * section, it asks, "_Why did you choose
Sugar Labs ?_" Is this a typo? Should I replace "Sugar Labs"
with "GFOSS"?
* In the *Motivation *section (at the end of the template). It
asks for the following: _Convince us that you will be a good fit
for the GFOSS project you have selected by sharing links from
GFOSS Projects._ However, the link attached is the following
(Click Here
<https://ellak.gr/wiki/index.php?title=Google_Summer_of_Code_2019_proposed_ideas>).
This has a list of GSoC projects from 2019. What should I fill
in here?
*No you should not do anything from the above. Sugar Labs is the
project so I assume it means Apothesis. **
*
I also had a few doubts regarding the content that I am adding in my
proposal:
* I have also attached a few research articles demonstrating the
importance of implementing HCP and Diamond Lattices in Apothesis
in my proposal. Are there any resources/ scholarly articles you
suggest I use to grasp the underlying concepts better?
*What you have added are sufficient. **
*
* For the*Timeline*section, I would like to ask for guidance. What
is the best approach, or do you have a tentative timeline? I
would appreciate your input.
*If your proposal is successful, the timeline is 12 weeks (3 months).
One month per lattice and one month for preparation/validation would
be great. **
*
*
* Should I also add a section detailing my educational background
in the *Previous Work *section?
*Yes, this could be very useful. **
*
I have attached a draft of my proposal for your review, I will be
done with all sections except for the *Milestones *and*Timeline
*section, which I will start working on soon. I appreciate any
feedback or criticism you might have. I am looking forward to
hearing back from you.
*Up till now it looks great! **
*
Best Regards,
Ujjwal Shekhar **
------------------------------------------------------------------------
*From:* Nikolaos (Nikos) Cheimarios <nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
<mailto:nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
*Sent:* Saturday, March 25, 2023 1:05 PM
*To:* Ujjwal Shekhar <ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>
<mailto:ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>;
gsoc-developers [ at ] ellak [ dot ] gr <mailto:gsoc-developers [ at ] ellak [ dot ] gr>
<gsoc-developers [ at ] ellak [ dot ] gr> <mailto:gsoc-developers [ at ] ellak [ dot ] gr>
*Subject:* Re: GSoC Project - Interest in "Creating new lattices for
Apothesis" idea
Hi Ujjwal,
nice work!
I am not sure about the python scripts, since the main idea is that
the user will only use the input file which is a plain text.
However, it is really we can have it on apothesis for someone that
would like to use it.
Yes please, go ahead and create the PR.
And yes please also start working on your proposal and when you have
a finished draft I can take a look and provide feedback.
Best regards,
Nikos
Στις 24/3/2023 7:43 π.μ., ο/η Ujjwal Shekhar έγραψε:
Greetings,
I hope this message finds you well.
Over the past day, I have been working on Apothesis and have made
some progress in tweaking input.kmc to achieve different runs. I
have created several Python scripts to run Apothesis with different
input parameters and have also written two additional scripts to
clean the outputs and generate plots. Please find attached the
scripts, the results obtained, and a few inferences.
I have identified a few potential Quality of Life improvements,
including adding details on how to run the software in the
README.md, moving the ./apothesis executable inside the src folder,
and providing instructions on how to use the attached script(s) in
the PDF. Should I make pull requests for the first two, since they
are essential to anyone using Apothesis?
Moving forward, I would appreciate your guidance on what steps to
take next. Should I begin working on my proposal? If so, what
components should I include, and do you think I should update you
at certain intervals?
Please let me know your thoughts and any feedback or criticism you
may have. Thank you for your valuable time and consideration.
Best regards,
Ujjwal Shekhar
------------------------------------------------------------------------
*From:* Nikolaos (Nikos) Cheimarios <nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
<mailto:nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
*Sent:* Wednesday, March 22, 2023 8:38 PM
*To:* Ujjwal Shekhar <ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>
<mailto:ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>;
gsoc-developers [ at ] ellak [ dot ] gr <mailto:gsoc-developers [ at ] ellak [ dot ] gr>
<gsoc-developers [ at ] ellak [ dot ] gr> <mailto:gsoc-developers [ at ] ellak [ dot ] gr>
*Subject:* Re: GSoC Project - Interest in "Creating new lattices
for Apothesis" idea
Τhank you very much Ujjwal.
You have done an excellent work.
I kindly ask you to perform some experiments with Apothesis.
The input file contains the system to simulate.
CO + * -> CO*: constant 0.4 #0.389
This is the yCO.
O2 + 2* -> 2O*: constant 0.15 all #0.611
This is the yO.
I kindly ask you to make a parametric study, i.e. change the value of
yCO from 0.1 to 0.9 and yO = (1-yCO)/4
and measure the growth rate and the coverage.
Set time to 1000 (e.g. time: 1000).
So at the end you can report a table:
time step | yCO | yO | growth rate | coverage CO | coverage O |
The time step in the table is where the run will stop. Once you
execute apothesis you will understand what I am talking about.
Best regards,
Nikos
Στις 22/3/2023 12:55 μ.μ., ο/η Ujjwal Shekhar έγραψε:
Greetings,
I hope you're doing well. I have successfully compiled Apothesis
on my local machine and have attached the commands I used for
future reference.
Furthermore, I have been actively working on expanding my
understanding of Monte Carlo methods and basic Markov Chains
beyond the scope of my coursework. Yesterday, I studied these
concepts from various online resources and specifically explored
how to model Graphene lattice using KMC. Although the resource
used MATLAB, I am confident that I can easily replicate the
concepts in C++. I have included my notes and relevant links for
you to look over.
Moving forward, I would appreciate your guidance on what steps to
take next. Should I begin working on my proposal? If so, what
components should I include, and do you think I should update you
at certain intervals? I welcome any feedback or criticism that you
may have.
Thank you for your valuable time and consideration.
Best regards,
Ujjwal Shekhar
/P.S.: The commands used for compiling Apothesis on Ubuntu 20.02
```bash (In the Apothesis directory)
/
/sudo apt install qtchooser/
/sudo apt-get install qt5-default/
/qmake/
/make
```/
_
_
------------------------------------------------------------------------
*From:* Nikolaos (Nikos) Cheimarios <nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
<mailto:nixeimar [ at ] chemeng [ dot ] ntua [ dot ] gr>
*Sent:* Tuesday, March 21, 2023 2:06 PM
*To:* gsoc-developers [ at ] ellak [ dot ] gr <mailto:gsoc-developers [ at ] ellak [ dot ] gr>
<gsoc-developers [ at ] ellak [ dot ] gr> <mailto:gsoc-developers [ at ] ellak [ dot ] gr>;
Ujjwal Shekhar <ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>
<mailto:ujjwal [ dot ] shekhar [ at ] research [ dot ] iiit [ dot ] ac [ dot ] in>
*Subject:* GSoC Project - Interest in "Creating new lattices for
Apothesis" idea
Dear Ujjwal. Thank you for you interest in our project.
I kindly ask you to first compile apothesis.
Are you familiar with the kinetic Monte Carlo method?
Best regards,
Nikos
----
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